STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC08g41850DBnaC08g41850D protein. (344 aa)    
Predicted Functional Partners:
BnaA06g13450D
BnaA06g13450D protein; Belongs to the MT-A70-like family.
   
  
 0.498
BnaA06g13610D
BnaA06g13610D protein; Belongs to the MT-A70-like family.
   
  
 0.498
BnaA09g42750D
BnaA09g42750D protein.
      
 0.495
BnaCnng25310D
BnaCnng25310D protein; Belongs to the MT-A70-like family.
   
  
 0.491
BnaC03g59730D
BnaC03g59730D protein.
      
 0.485
BnaAnng11340D
BnaAnng11340D protein.
      
 0.485
BnaC03g47110D
BnaC03g47110D protein.
      
 0.479
BnaC03g29970D
BnaC03g29970D protein.
   
  
 0.478
BnaC06g15100D
BnaC06g15100D protein.
      
 0.465
BnaC05g00320D
BnaC05g00320D protein.
      
 0.465
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.