STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g41480DBnaA09g41480D protein. (116 aa)    
Predicted Functional Partners:
BnaC03g54740D
BnaC03g54740D protein.
   
 0.771
BnaA05g30740D
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.771
BnaCnng32180D
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.771
BnaCnng02700D
BnaCnng02700D protein.
     
 0.738
BnaC02g03360D
BnaC02g03360D protein.
     
 0.738
BnaA09g00280D
BnaA09g00280D protein.
     
 0.738
BnaA04g11980D
BnaA04g11980D protein.
  
 
  0.717
BnaA09g43400D
BnaA09g43400D protein.
  
 
  0.714
BnaA02g07550D
BnaA02g07550D protein.
     
 0.701
BnaCnng42430D
BnaCnng42430D protein.
     
 0.701
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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