STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA05g30100DBnaA05g30100D protein. (648 aa)    
Predicted Functional Partners:
BnaC05g43740D
BnaC05g43740D protein.
   
 0.990
BnaA05g29410D
BnaA05g29410D protein.
   
 0.990
BnaA02g25890D
BnaA02g25890D protein.
    
0.982
BnaC02g47740D
BnaC02g47740D protein.
    
0.982
BnaC03g59730D
BnaC03g59730D protein.
    
 0.978
BnaAnng11340D
BnaAnng11340D protein.
    
 0.978
BnaCnng18650D
BnaCnng18650D protein.
  
 
 0.974
BnaA01g17530D
BnaA01g17530D protein.
    
  0.961
BnaC08g10600D
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
  0.961
BnaC06g23390D
BnaC06g23390D protein.
   
 0.933
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.