STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g11200DBnaA09g11200D protein. (433 aa)    
Predicted Functional Partners:
BnaA02g16190D
BnaA02g16190D protein.
  
     0.480
BnaA02g35050D
BnaA02g35050D protein.
  
     0.476
BnaC04g32140D
BnaC04g32140D protein.
  
     0.473
BnaA01g33710D
BnaA01g33710D protein.
  
     0.460
BnaC04g31910D
BnaC04g31910D protein.
  
     0.454
BnaC03g62000D
BnaC03g62000D protein.
  
     0.454
BnaCnng16130D
BnaCnng16130D protein.
  
     0.452
BnaC06g23910D
BnaC06g23910D protein.
  
     0.449
BnaC05g19150D
BnaC05g19150D protein.
  
     0.443
BnaC05g13690D
BnaC05g13690D protein.
  
     0.442
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.