STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA08g19580DBnaA08g19580D protein. (460 aa)    
Predicted Functional Partners:
BnaA09g00060D
CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family.
     
 0.938
BnaC03g73190D
BnaC03g73190D protein.
    
  0.491
BnaA06g19010D
BnaA06g19010D protein.
  
  
 0.474
BnaA08g13850D
BnaA08g13850D protein.
    
 0.461
BnaC06g12430D
BnaC06g12430D protein.
   
  0.458
BnaC09g37960D
BnaC09g37960D protein.
  
 0.432
BnaC02g08980D
BnaC02g08980D protein.
  
 0.432
BnaC02g41410D
BnaC02g41410D protein.
  
 0.432
BnaC05g12370D
BnaC05g12370D protein.
   
 
  0.405
BnaA09g56360D
BnaA09g56360D protein; Belongs to the DEAD box helicase family.
   
 
  0.405
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.