STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA08g19180DBnaA08g19180D protein. (73 aa)    
Predicted Functional Partners:
BnaCnng60760D
BnaCnng60760D protein.
      
 0.539
BnaC01g14290D
BnaC01g14290D protein.
      
 0.514
BnaA01g06600D
BnaA01g06600D protein.
      
 0.512
BnaC01g14300D
BnaC01g14300D protein.
      
 0.508
BnaAnng10120D
BnaAnng10120D protein; Belongs to the peptidase S8 family.
      
 0.493
BnaC07g18060D
BnaC07g18060D protein; Belongs to the peptidase S8 family.
      
 0.493
BnaCnng04890D
BnaCnng04890D protein.
      
 0.471
BnaA08g19170D
BnaA08g19170D protein.
      
 0.471
BnaA07g36710D
BnaA07g36710D protein.
      
 0.471
BnaA03g47380D
BnaA03g47380D protein.
      
 0.467
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.