Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA01g31280DBnaA01g31280D protein. (817 aa)    
Predicted Functional Partners:
BnaAnng23500D
BnaAnng23500D protein.
  
  
 
0.903
BnaA04g05330D
BnaA04g05330D protein.
     
  0.667
BnaC03g72450D
BnaC03g72450D protein.
     
  0.576
BnaA09g39760D
BnaA04g27270D protein.
     
  0.576
BnaA07g09990D
BnaA07g09990D protein.
     
  0.576
BnaA08g20480D
BnaA08g20480D protein.
     
  0.576
BnaCnng30170D
BnaCnng30170D protein.
     
  0.576
BnaA09g03410D
BnaA09g03410D protein.
   
  
 0.538
BnaA06g23580D
BnaA06g23580D protein.
      
 0.480
BnaA09g43940D
BnaA09g43940D protein.
      
 0.415
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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