STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC02g38230DProline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate. (498 aa)    
Predicted Functional Partners:
BnaC03g74750D
BnaC03g74750D protein.
  
 0.965
BnaA06g36140D
Ornithine aminotransferase.
    
 0.844
BnaA09g17630D
BnaA09g17630D protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.816
BnaC09g18770D
BnaC09g18770D protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.816
BnaA02g23880D
BnaA02g23880D protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.816
BnaA02g36580D
BnaA02g36580D protein.
  
  
 0.816
BnaC02g46970D
BnaC02g46970D protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.816
BnaAnng35510D
BnaAnng35510D protein.
  
  
 0.816
BnaA03g18760D
Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.
   
 
 0.804
BnaC04g05620D
Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.
   
 
 0.804
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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