STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA01g32740DBnaA01g32740D protein. (224 aa)    
Predicted Functional Partners:
BnaAnng30830D
BnaAnng30830D protein.
  
 
 
 0.746
BnaC06g42240D
BnaC06g42240D protein.
  
 
 
 0.731
BnaCnng61200D
BnaCnng61200D protein.
  
 
 
 0.728
BnaA08g20020D
BnaA08g20020D protein.
  
 
 
 0.642
BnaC07g12550D
BnaC07g12550D protein.
  
 
 
 0.636
BnaA07g09310D
BnaA07g09310D protein.
  
 
 
 0.635
BnaA09g29410D
BnaA09g29410D protein.
  
 
 
 0.633
BnaA02g36990D
BnaA02g36990D protein.
  
 
 
 0.632
BnaA09g02380D
BnaA09g02380D protein.
  
 
 
 0.625
BnaCnng42180D
BnaCnng42180D protein.
  
 
 
 0.619
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.