STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA06g10080DBnaA06g10080D protein. (389 aa)    
Predicted Functional Partners:
BnaA01g31570D
BnaA01g31570D protein.
   
 
 0.950
BnaC09g50680D
BnaC09g50680D protein.
   
 
 0.950
BnaA09g20370D
BnaA09g20370D protein.
    
 0.945
BnaA03g59800D
BnaA03g59800D protein.
    
 0.945
BnaC02g25610D
BnaC02g25610D protein.
    
 0.933
BnaC05g12550D
Sulfurtransferase.
    
 0.933
BnaA06g11040D
Sulfurtransferase.
    
 0.933
BnaA06g00850D
BnaA06g00850D protein.
   
 
 0.928
BnaC03g69760D
BnaC03g69760D protein.
   
 
 0.928
BnaC06g06420D
BnaC06g06420D protein.
   
 
 0.928
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.