STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA07g01080DBnaA07g01080D protein. (917 aa)    
Predicted Functional Partners:
BnaC03g69810D
BnaC03g69810D protein.
   
 0.768
BnaA05g14350D
BnaA05g14350D protein.
   
 0.768
BnaC06g10150D
BnaC06g10150D protein.
   
 0.768
BnaC03g47050D
BnaC03g47050D protein; Belongs to the AAA ATPase family.
   
 0.768
BnaA09g39660D
BnaA09g39660D protein.
    
 0.714
BnaC06g23830D
BnaC06g23830D protein.
    
 
 0.643
BnaA02g16240D
BnaA02g16240D protein.
    
 
 0.643
BnaC06g43840D
BnaC06g43840D protein.
    
 
 0.643
BnaC09g46620D
BnaC09g46620D protein.
    
 0.609
BnaC09g47210D
BnaC09g47210D protein.
    
 0.609
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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