STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC03g59500DBnaC03g59500D protein. (535 aa)    
Predicted Functional Partners:
BnaA03g53900D
BnaA03g53900D protein.
  
     0.541
BnaA09g09070D
BnaA09g09070D protein.
  
     0.537
BnaA09g36210D
BnaA09g36210D protein.
  
     0.520
BnaC04g24780D
BnaC04g24780D protein.
  
     0.520
BnaCnng20420D
BnaCnng20420D protein.
  
     0.520
BnaA05g14260D
BnaA05g14260D protein.
  
     0.514
BnaAnng40500D
BnaAnng40500D protein.
  
     0.513
BnaC02g35030D
BnaC02g35030D protein.
  
     0.512
BnaC05g48890D
BnaC05g48890D protein.
  
     0.509
BnaCnng75030D
BnaCnng75030D protein.
  
     0.506
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.