STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g30350DBnaC05g30350D protein. (759 aa)    
Predicted Functional Partners:
BnaA06g03150D
BnaA06g03150D protein.
  
 
 
 0.668
BnaC04g31350D
BnaC04g31350D protein.
  
 
 
 0.667
BnaUnng00680D
BnaUnng00680D protein.
  
 
 
 0.667
BnaC01g41960D
BnaC01g41960D protein.
  
 
  0.521
BnaC02g30120D
BnaC02g30120D protein.
  
 
   0.518
BnaC02g09200D
BnaC02g09200D protein.
  
 
  0.516
BnaA05g17340D
BnaA05g17340D protein.
  
 
  0.510
BnaC01g23430D
BnaC01g23430D protein.
  
 
   0.506
BnaC05g15940D
BnaC05g15940D protein.
  
 
  0.494
BnaC09g40980D
BnaC09g40980D protein.
      
 0.493
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.