STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA04g26240DBnaA04g26240D protein; Belongs to the AAA ATPase family. (511 aa)    
Predicted Functional Partners:
BnaA09g39660D
BnaA09g39660D protein.
     
 0.809
BnaC04g26510D
Reticulon-like protein.
    
 0.769
BnaC06g43020D
BnaC06g43020D protein.
    
 0.718
BnaC06g43030D
BnaC06g43030D protein.
    
 0.718
BnaCnng55160D
BnaCnng55160D protein.
    
 0.718
BnaA09g35650D
BnaA09g35650D protein.
    
 0.706
BnaC06g15800D
BnaC06g15800D protein.
    
 0.706
BnaC04g55510D
BnaC04g55510D protein.
    
 0.706
BnaA06g02640D
BnaA06g02640D protein.
   
 0.673
BnaC06g03890D
BnaC06g03890D protein.
   
 0.673
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.