Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA03g11170DBnaA03g11170D protein. (492 aa)    
Predicted Functional Partners:
BnaC09g50620D
BnaC09g50620D protein.
    
 
 0.683
BnaA05g28300D
BnaA05g28300D protein.
    
 
 0.575
BnaA01g31600D
BnaA01g31600D protein.
    
 
 0.575
BnaAnng26810D
BnaAnng26810D protein.
    
 
 0.575
BnaA02g26940D
Auxin efflux carrier component; May act as a component of the auxin efflux carrier. Belongs to the auxin efflux carrier (TC 2.A.69.1) family.
    
 
 0.561
BnaC02g47640D
Auxin efflux carrier component; May act as a component of the auxin efflux carrier. Belongs to the auxin efflux carrier (TC 2.A.69.1) family.
    
 
 0.561
BnaC08g20070D
Phosphatidylinositol 4-phosphate 5-kinase.
      
 0.522
BnaA02g16500D
Auxin efflux carrier component; May act as a component of the auxin efflux carrier. Belongs to the auxin efflux carrier (TC 2.A.69.1) family.
    
 
 0.517
BnaCnng76990D
Auxin efflux carrier component; May act as a component of the auxin efflux carrier. Belongs to the auxin efflux carrier (TC 2.A.69.1) family.
    
 
 0.517
BnaC02g24660D
Phosphatidylinositol 4-phosphate 5-kinase.
      
 0.484
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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