STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC06g12590DBnaC06g12590D protein. (650 aa)    
Predicted Functional Partners:
BnaA02g33860D
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
    
 0.612
BnaA09g03810D
BnaA09g03810D protein; Belongs to the cyclin family.
    
 0.597
BnaC09g54490D
BnaC09g54490D protein.
    
 
 0.545
BnaC03g63590D
BnaC03g63590D protein; Belongs to the cyclin family.
    
 0.539
BnaC03g58020D
BnaC03g58020D protein; Belongs to the cyclin family.
    
 0.539
BnaA01g22300D
BnaA01g22300D protein; Belongs to the cyclin family.
    
 0.539
BnaA02g23750D
BnaA02g23750D protein; Belongs to the cyclin family.
    
 0.539
BnaAnng05470D
BnaAnng05470D protein; Belongs to the cyclin family.
    
 0.539
BnaC01g43170D
BnaC01g43170D protein; Belongs to the cyclin family.
    
 0.539
BnaA07g36600D
BnaA07g36600D protein; Belongs to the cyclin family.
    
 0.539
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.