STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC02g06680DBnaC02g06680D protein. (398 aa)    
Predicted Functional Partners:
BnaAnng18530D
BnaAnng18530D protein.
    
 
 0.502
BnaCnng14500D
BnaA02g12180D protein.
      
 0.495
BnaA07g00600D
BnaA07g00600D protein.
    
 
 0.494
BnaC03g26690D
BnaC03g26690D protein.
    
 
 0.478
BnaA03g17330D
BnaA03g17330D protein.
      
 0.477
BnaC04g50150D
BnaC04g50150D protein.
    
 
 0.472
BnaA07g38010D
BnaA07g38010D protein.
    
 
 0.472
BnaAnng40070D
BnaAnng40070D protein.
    
 
 0.472
BnaA04g16520D
BnaA04g16520D protein.
      
 0.470
BnaC02g19900D
BnaC02g19900D protein.
      
 0.467
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.