STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA04g26570DBnaA04g26570D protein. (233 aa)    
Predicted Functional Partners:
BnaC09g21680D
BnaC09g21680D protein.
  
    0.577
BnaA02g27750D
BnaA02g27750D protein.
  
    0.577
BnaA06g33190D
BnaA06g33190D protein.
  
    0.570
BnaC01g31600D
BnaC01g31600D protein.
  
     0.499
BnaC03g42780D
BnaC03g42780D protein.
  
     0.496
BnaA03g11220D
BnaA03g11220D protein.
  
     0.495
BnaA01g36620D
BnaA01g36620D protein.
  
     0.493
BnaC03g14050D
BnaC03g14050D protein.
  
     0.492
BnaC05g30200D
BnaC05g30200D protein.
  
     0.487
BnaA02g24140D
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.
   
  
 0.483
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.