STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA03g11330DBnaA03g11330D protein. (435 aa)    
Predicted Functional Partners:
BnaA01g30430D
BnaA01g30430D protein.
    
 
 0.776
BnaC01g38570D
BnaC01g38570D protein.
    
 
 0.776
BnaC02g20770D
BnaC02g20770D protein.
  
 
0.702
BnaCnng07840D
BnaCnng07840D protein.
  
 
0.701
BnaA09g14300D
BnaA09g14300D protein.
  
 
 0.540
BnaC03g41120D
BnaC03g41120D protein.
   
 
 0.533
BnaC06g04460D
BnaC06g04460D protein.
  
 
 0.531
BnaAnng34920D
BnaAnng34920D protein.
  
 
 0.529
BnaC09g00470D
BnaC09g00470D protein.
  
 
 
0.526
BnaA09g01310D
BnaA09g01310D protein.
  
 
 
0.526
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.