Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC08g19860DBnaC08g19860D protein. (704 aa)    
Predicted Functional Partners:
BnaA08g06430D
BnaA08g06430D protein.
      
 0.508
BnaA03g53640D
BnaA03g53640D protein.
      
 0.499
BnaC04g36830D
BnaC04g36830D protein.
   
 
  0.496
BnaC03g26940D
BnaC03g26940D protein.
   
 
  0.496
BnaCnng50490D
BnaCnng50490D protein.
     
 0.439
BnaC03g16550D
BnaC03g16550D protein.
  
  
  0.434
BnaC01g19100D
BnaC01g19100D protein.
  
  
  0.419
BnaA10g13350D
BnaA10g13350D protein; Belongs to the protein kinase superfamily.
  
     0.418
BnaA07g00650D
BnaA07g00650D protein.
    
  0.409
BnaA02g06210D
BnaA02g06210D protein; Belongs to the protein kinase superfamily.
  
     0.408
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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