STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC07g18480DBnaC07g18480D protein. (1128 aa)    
Predicted Functional Partners:
BnaA09g08180D
BnaA09g08180D protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
 0.517
BnaA02g34890D
BnaA02g34890D protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
 0.517
BnaC02g45110D
BnaC02g45110D protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
 0.517
BnaC05g26750D
Serine/threonine-protein phosphatase.
    
  0.467
BnaC03g30360D
Serine/threonine-protein phosphatase.
    
  0.467
BnaC03g30380D
BnaC03g30380D protein.
    
  0.467
BnaC08g43180D
Serine/threonine-protein phosphatase.
    
  0.467
BnaA05g15720D
Serine/threonine-protein phosphatase.
    
  0.467
BnaA08g26980D
Serine/threonine-protein phosphatase.
    
  0.467
BnaC02g46770D
Serine/threonine-protein phosphatase.
    
  0.467
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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