Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g08110DBnaC05g08110D protein. (721 aa)    
Predicted Functional Partners:
BnaC06g00700D
BnaC06g00700D protein.
     
 0.518
BnaA10g08730D
BnaA10g08730D protein.
     
 0.518
BnaC06g14210D
BnaC06g14210D protein.
    
 
 0.517
BnaC06g14200D
BnaC06g14200D protein.
    
 
 0.517
BnaC03g70040D
BnaC03g70040D protein.
      
 0.479
BnaA06g00570D
BnaA06g00570D protein.
      
 0.479
BnaC06g07030D
BnaC06g07030D protein.
      
 0.479
BnaCnng28470D
BnaCnng28470D protein.
      
 0.479
BnaAnng22590D
BnaAnng22590D protein.
      
 0.477
BnaCnng04950D
BnaA08g19130D protein.
      
 0.453
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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