STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g11640DBnaC05g11640D protein. (348 aa)    
Predicted Functional Partners:
BnaCnng43280D
BnaCnng43280D protein.
      
 0.478
BnaCnng05600D
BnaCnng05600D protein.
    
 0.472
BnaA05g33850D
BnaA05g33850D protein.
    
 0.472
BnaC05g48830D
BnaC05g48830D protein.
    
 0.472
BnaC02g09990D
BnaC02g09990D protein.
      
 0.472
BnaA02g07070D
BnaA02g07070D protein.
      
 0.472
BnaCnng34510D
BnaCnng34510D protein.
      
 0.472
BnaCnng20230D
BnaCnng20230D protein.
      
 0.469
BnaA09g20790D
BnaA09g20790D protein.
    
 0.440
BnaCnng56400D
BnaCnng56400D protein.
    
 0.440
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.