Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g10470DBnaA09g10470D protein. (390 aa)    
Predicted Functional Partners:
BnaAnng41460D
BnaAnng41460D protein; Belongs to the protein kinase superfamily.
  
 
0.627
BnaC05g09360D
BnaC05g09360D protein.
   
  
 0.605
BnaA09g30390D
BnaA09g30390D protein.
      
 0.527
BnaA01g14140D
BnaA01g14140D protein.
      
 0.491
BnaC07g48230D
BnaC07g48230D protein.
      
 0.482
BnaC07g16480D
BnaC07g16480D protein; Belongs to the protein kinase superfamily.
  
 
0.476
BnaAnng13570D
BnaAnng13570D protein.
      
 0.453
BnaA06g33000D
BnaA06g33000D protein; Belongs to the TPP enzyme family.
      
 0.440
BnaA07g00650D
BnaA07g00650D protein.
    
 0.440
BnaC04g02910D
Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.
      
 0.413
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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