STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g34820DBnaA09g34820D protein. (467 aa)    
Predicted Functional Partners:
BnaC09g39320D
BnaC09g39320D protein.
   
    0.779
BnaA04g11000D
BnaA04g11000D protein; Belongs to the NOB1 family.
   
    0.779
BnaC04g33060D
BnaC04g33060D protein; Belongs to the NOB1 family.
   
    0.779
BnaC06g42290D
BnaC06g42290D protein.
   
    0.779
BnaA06g19140D
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  
 0.612
BnaA06g24800D
BnaA06g24800D protein.
   
  
 0.559
BnaCnng21620D
BnaCnng21620D protein.
   
  
 0.559
BnaAnng06080D
BnaAnng06080D protein.
  
    0.553
BnaA01g23090D
BnaA01g23090D protein.
      
 0.518
BnaC04g32670D
Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.
   
    0.513
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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