STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA04g13890DBnaA04g13890D protein. (326 aa)    
Predicted Functional Partners:
BnaA08g26290D
BnaA08g26290D protein.
  
  
 
0.583
BnaAnng09770D
BnaAnng09770D protein.
  
  
 
0.581
BnaCnng19870D
BnaCnng19870D protein.
  
  
 
0.581
BnaC01g27440D
BnaC01g27440D protein.
  
  
 
0.579
BnaCnng71900D
BnaCnng71900D protein.
  
  
 
0.579
BnaC08g13670D
BnaC08g13670D protein.
  
  
 
0.573
BnaA09g07780D
BnaA09g07780D protein.
  
  
 
0.554
BnaC02g29540D
BnaC02g29540D protein.
  
  
 
0.554
BnaC02g48870D
BnaC02g48870D protein.
  
  
 
0.554
BnaCnng26490D
BnaCnng26490D protein.
  
  
 
0.554
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.