Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g10190DBnaA09g10190D protein. (732 aa)    
Predicted Functional Partners:
BnaA02g24620D
BnaA02g24620D protein.
      
 0.620
BnaC04g00940D
BnaC04g00940D protein.
      
 0.584
BnaC05g13940D
BnaC05g13940D protein.
  
  
0.507
BnaCnng33260D
BnaCnng33260D protein.
      
 0.507
BnaA06g12340D
BnaA06g12340D protein.
  
  
0.506
BnaC04g19550D
BnaC04g19550D protein; Belongs to the peptidase S8 family.
      
 0.505
BnaA03g60380D
BnaA03g60380D protein; Belongs to the peptidase S8 family.
      
 0.505
BnaAnng20560D
BnaAnng20560D protein.
      
 0.505
BnaA06g35990D
BnaA06g35990D protein.
      
 0.503
BnaA02g24490D
BnaA02g24490D protein.
      
 0.503
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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