STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g12990DBnaC05g12990D protein. (453 aa)    
Predicted Functional Partners:
BnaC08g15380D
BnaC08g15380D protein.
  
     0.538
BnaA03g18620D
BnaA03g18620D protein.
  
     0.536
BnaC08g41550D
BnaC08g41550D protein.
  
     0.536
BnaA08g24890D
BnaA08g24890D protein.
  
     0.536
BnaC03g22110D
BnaC03g22110D protein.
  
     0.536
BnaA09g47370D
BnaA09g47370D protein.
  
     0.536
BnaC01g23450D
BnaC01g23450D protein.
  
     0.535
BnaA09g04050D
BnaA09g04050D protein.
  
     0.535
BnaC09g42280D
BnaC09g42280D protein.
  
     0.534
BnaC05g48460D
BnaC05g48460D protein.
  
     0.533
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.