STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA04g20700DBnaA04g20700D protein. (445 aa)    
Predicted Functional Partners:
BnaC.PSY.a
BnaC09g40730D protein.
   
 
 0.680
BnaA03g47110D
BnaA03g47110D protein.
   
 0.581
BnaA04g17950D
Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.
   
 0.581
BnaA01g14420D
BnaA01g14420D protein.
   
 0.581
BnaC04g13690D
BnaC04g13690D protein.
   
 0.581
BnaC04g13700D
BnaC04g13700D protein.
   
 0.581
BnaA02g07780D
BnaA02g07780D protein.
  
 
 0.557
BnaC09g33670D
BnaC09g33670D protein.
  
 
 0.557
BnaC03g65910D
BnaC03g65910D protein.
   
 
 0.553
BnaA03g52950D
BnaA03g52950D protein.
   
 
 0.553
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.