Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA01g32040DBnaA01g32040D protein. (434 aa)    
Predicted Functional Partners:
BnaC06g10920D
BnaC06g10920D protein.
   
  
 0.534
BnaA03g51000D
BnaA03g51000D protein.
     
 0.507
BnaA07g24800D
BnaA07g24800D protein.
      
 0.498
BnaC08g44830D
BnaC08g44830D protein.
      
 0.498
BnaA09g10060D
BnaA09g10060D protein.
      
 0.498
BnaA06g40280D
BnaA06g40280D protein.
      
 0.498
BnaA08g06880D
BnaA08g06880D protein.
   
  
 0.466
BnaC05g51340D
BnaC05g51340D protein.
   
  
 0.466
BnaCnng07350D
BnaCnng07350D protein.
  
  0.447
BnaC04g56870D
BnaC04g56870D protein.
  
  0.420
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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