STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g10200DBnaA09g10200D protein. (366 aa)    
Predicted Functional Partners:
BnaA06g36240D
Nuclear cap-binding protein subunit 2.
    
 0.580
BnaA01g32500D
BnaA01g32500D protein.
   
 
 0.508
BnaA06g23350D
BnaA06g23350D protein.
    
 0.502
BnaC03g61080D
BnaC03g61080D protein.
      
 0.491
BnaA02g05570D
RuvB-like helicase; Belongs to the RuvB family.
   
 
 0.473
BnaC02g09460D
RuvB-like helicase; Belongs to the RuvB family.
   
 
 0.473
BnaA07g04030D
BnaA07g04030D protein.
    
 0.467
BnaC03g63890D
Small nuclear ribonucleoprotein-associated protein.
    
 0.457
BnaA09g08310D
BnaA09g08310D protein.
    
 0.454
BnaUnng02290D
BnaUnng02290D protein.
    
 0.454
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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