Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC02g34790DBnaC02g34790D protein; Belongs to the protein kinase superfamily. (444 aa)    
Predicted Functional Partners:
BnaC04g02510D
BnaC04g02510D protein.
     
 0.623
BnaC04g47770D
BnaC04g47770D protein.
      
 0.587
BnaC04g23900D
BnaC04g23900D protein.
     
 0.547
BnaA04g27560D
BnaA04g27560D protein.
     
 0.547
BnaC09g39870D
BnaC09g39870D protein.
      
 0.510
BnaA10g16860D
BnaA10g16860D protein.
      
 0.510
BnaA10g11020D
BnaA10g11020D protein.
    
   0.463
BnaCnng14080D
BnaCnng14080D protein.
    
   0.463
BnaC09g53720D
BnaC09g53720D protein.
    
   0.463
BnaC09g00700D
BnaC09g00700D protein.
    
 0.443
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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