Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g14750DBnaC05g14750D protein. (603 aa)    
Predicted Functional Partners:
BnaC04g24880D
BnaC04g24880D protein.
  
 0.656
BnaC04g51710D
BnaC04g51710D protein.
  
 0.650
BnaA04g26710D
BnaA04g26710D protein.
  
 0.650
BnaC03g44950D
BnaC03g44950D protein.
      
 0.614
BnaA03g48240D
BnaA03g48240D protein.
      
 0.612
BnaAnng33780D
BnaAnng33780D protein.
      
 0.612
BnaA08g12990D
BnaA08g12990D protein.
    
 0.587
BnaAnng37940D
BnaAnng37940D protein.
    
 0.587
BnaA09g24880D
BnaA09g24880D protein.
      
 0.585
BnaAnng03190D
BnaAnng03190D protein.
      
 0.585
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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