STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g14750DBnaC05g14750D protein. (603 aa)    
Predicted Functional Partners:
BnaC04g24880D
BnaC04g24880D protein.
  
 
 0.611
BnaC04g51710D
BnaC04g51710D protein.
  
 
 0.595
BnaA04g26710D
BnaA04g26710D protein.
  
 
 0.595
BnaA08g12990D
BnaA08g12990D protein.
    
 0.508
BnaAnng37940D
BnaAnng37940D protein.
    
 0.508
BnaA05g26830D
BnaA05g26830D protein.
   
 0.484
BnaCnng23010D
BnaA01g30820D protein.
   
 0.484
BnaA06g19770D
BnaA06g19770D protein.
      
 0.471
BnaA01g26270D
BnaA01g26270D protein.
  
 
 0.469
BnaC03g40790D
BnaC03g40790D protein.
  
 
 0.469
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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