Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA03g53440DBnaA03g53440D protein; Belongs to the protein kinase superfamily. (435 aa)    
Predicted Functional Partners:
BnaCnng71580D
BnaCnng54430D protein.
      
 0.461
BnaA09g03980D
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.459
BnaCnng24990D
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.459
BnaCnng44550D
BnaCnng44550D protein; Belongs to the protein kinase superfamily.
  
  0.446
BnaC04g56870D
BnaC04g56870D protein.
  
  0.435
BnaC09g31820D
BnaC09g31820D protein; Belongs to the protein kinase superfamily.
  
  
  0.417
BnaA07g00650D
BnaA07g00650D protein.
    
  0.409
BnaC07g16480D
BnaC07g16480D protein; Belongs to the protein kinase superfamily.
  
 
  0.408
BnaC08g15680D
BnaC08g15680D protein.
  
  0.408
BnaA04g13420D
BnaA04g13420D protein; Belongs to the protein kinase superfamily.
  
 
  0.407
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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