Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC02g41580DBnaC02g41580D protein. (514 aa)    
Predicted Functional Partners:
BnaA07g00650D
BnaA07g00650D protein.
   
 0.784
BnaC03g47900D
BnaC03g47900D protein.
      
 0.706
BnaC06g02640D
BnaC06g02640D protein.
    
 
 0.663
BnaA06g03040D
BnaA06g03040D protein.
    
 
 0.663
BnaA09g03360D
BnaA09g03360D protein.
    
 0.650
BnaCnng02620D
BnaCnng02620D protein.
   
 0.529
BnaA06g20570D
BnaA06g20570D protein.
    
 0.514
BnaCnng15180D
BnaCnng15180D protein.
    
 0.514
BnaA09g02460D
BnaA09g02460D protein.
    
 0.494
BnaCnng49330D
BnaCnng49330D protein.
    
 0.494
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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