STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA08g20390DBnaA08g20390D protein. (276 aa)    
Predicted Functional Partners:
BnaA03g19720D
BnaA03g19720D protein.
  
     0.520
BnaC04g52430D
BnaC04g52430D protein.
  
     0.520
BnaC03g23610D
BnaC03g23610D protein.
  
     0.512
BnaC04g48080D
BnaC04g48080D protein.
  
     0.497
BnaCnng71720D
BnaCnng71720D protein.
  
     0.496
BnaC02g42870D
BnaC02g42870D protein.
  
     0.492
BnaC05g29770D
BnaC05g29770D protein.
  
     0.488
BnaC09g37060D
BnaC09g37060D protein.
  
     0.486
BnaC08g48340D
BnaC08g48340D protein.
  
 
   0.475
BnaC08g19870D
BnaC08g19870D protein.
  
     0.471
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.