STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA10g27100DBnaA10g27100D protein. (333 aa)    
Predicted Functional Partners:
BnaCnng39660D
BnaCnng39660D protein.
  
  0.549
BnaA03g53850D
BnaA03g53850D protein.
  
  0.547
BnaA02g34570D
BnaA02g34570D protein.
  
 
   0.530
BnaAnng09570D
BnaAnng09570D protein.
  
 
   0.527
BnaC03g66140D
BnaC03g66140D protein.
  
     0.526
BnaA09g38530D
BnaA09g38530D protein.
  
 
   0.513
BnaAnng37500D
Transcription factor DREBIII-1.
  
   
 0.513
BnaA01g28970D
BnaA01g28970D protein.
  
     0.512
BnaA10g12950D
BnaA10g12950D protein.
  
 
  0.512
BnaA03g52830D
BnaA03g52830D protein.
  
     0.512
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.