Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA08g20440DBnaA08g20440D protein. (659 aa)    
Predicted Functional Partners:
BnaCnng08680D
BnaCnng08680D protein.
     
 0.570
BnaCnng08690D
BnaCnng08690D protein.
     
 0.570
BnaAnng22590D
BnaAnng22590D protein.
      
 0.565
BnaA08g02570D
BnaA08g02570D protein.
  
 0.498
BnaA07g04890D
BnaA07g04890D protein.
  
  
 0.498
BnaC09g43110D
BnaC09g43110D protein.
     
 0.478
BnaA04g18240D
BnaA04g18240D protein.
  
 0.464
BnaC04g42320D
BnaC04g42320D protein.
  
 0.462
BnaA05g11270D
BnaA05g11270D protein.
  
 0.459
BnaC03g17520D
BnaC03g17520D protein.
  
 0.455
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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