STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA01g12430DBnaA01g12430D protein. (125 aa)    
Predicted Functional Partners:
BnaA09g38650D
BnaA09g38650D protein.
   
 
 0.660
BnaC04g22070D
BnaC04g22070D protein.
   
 
 0.660
BnaC09g29000D
BnaC09g29000D protein.
   
 
 0.550
BnaA10g06340D
BnaA10g06340D protein.
   
 
 0.550
BnaCnng05970D
BnaCnng05970D protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family.
    
 
 0.547
BnaA05g33320D
BnaA05g33320D protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family.
    
 
 0.547
BnaC01g10280D
BnaC01g10280D protein.
    
   0.535
BnaC02g03090D
BnaC02g03090D protein.
    
   0.535
BnaA05g18900D
BnaA05g18900D protein.
    
 
 0.428
BnaC05g31910D
BnaC05g31910D protein.
    
 
 0.428
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.