STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA10g08510DBnaA10g08510D protein. (233 aa)    
Predicted Functional Partners:
BnaC04g24710D
BnaC04g24710D protein.
      
 0.444
BnaC04g24690D
BnaC04g24690D protein.
      
 0.444
BnaA02g27460D
BnaA02g27460D protein.
  
     0.443
BnaC04g24320D
BnaC04g24320D protein.
  
     0.433
BnaCnng07490D
BnaCnng07490D protein.
  
     0.433
BnaC09g22200D
BnaC09g22200D protein.
  
     0.412
BnaA05g20390D
BnaA05g20390D protein.
  
     0.405
BnaC05g32350D
BnaC05g32350D protein.
  
     0.403
BnaA02g05370D
BnaA02g05370D protein.
      
 0.400
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.