STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g46870DBnaC05g46870D protein. (956 aa)    
Predicted Functional Partners:
BnaA01g17140D
BnaA01g17140D protein.
  
 0.608
BnaC01g19960D
BnaC01g19960D protein.
  
 0.608
BnaC07g50110D
BnaC07g50110D protein.
  
 0.608
BnaC08g43520D
BnaC08g43520D protein.
    
   0.545
BnaA09g55440D
BnaA09g55440D protein.
    
   0.544
BnaA02g04740D
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
   
   0.543
BnaC05g23530D
BnaC05g23530D protein.
    
   0.535
BnaAnng10790D
BnaAnng10790D protein.
    
   0.511
BnaC09g39060D
BnaC09g39060D protein.
   
   0.511
BnaCnng28550D
BnaCnng28550D protein.
    
   0.511
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.