Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA08g07090DBnaA08g07090D protein; Belongs to the protein kinase superfamily. (411 aa)    
Predicted Functional Partners:
BnaC03g35040D
BnaC03g35040D protein.
      
 0.552
BnaA02g09280D
BnaA02g09280D protein.
      
 0.552
BnaA09g17240D
BnaA09g17240D protein.
  
  
  0.446
BnaA08g03500D
BnaA08g03500D protein.
      
 0.444
BnaC06g01660D
BnaC06g01660D protein.
      
 0.444
BnaAnng40040D
BnaAnng40040D protein.
      
 0.444
BnaA06g15970D
BnaA06g15970D protein.
  
  0.433
BnaA05g17520D
Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.
  
 
  0.428
BnaA09g04890D
BnaA09g04890D protein.
  
  0.422
BnaC04g56870D
BnaC04g56870D protein.
  
  0.419
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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