STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA01g17790DBnaA01g17790D protein. (178 aa)    
Predicted Functional Partners:
BnaA05g14660D
BnaA05g14660D protein.
    
 
 0.780
BnaC03g69430D
BnaC03g69430D protein.
    
 
 0.780
BnaC06g10060D
BnaC06g10060D protein.
    
 
 0.780
BnaAnng24840D
Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.
    
 0.484
BnaCnng68520D
Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.
    
 0.484
BnaC05g04130D
BnaC05g04130D protein.
   
    0.446
BnaA05g11370D
BnaA05g11370D protein.
   
    0.446
BnaA08g28440D
BnaA08g28440D protein.
   
    0.446
BnaA10g04020D
BnaA10g04020D protein.
   
    0.446
BnaCnng30720D
BnaCnng30720D protein.
   
    0.446
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.