STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA01g05710DBnaA01g05710D protein. (158 aa)    
Predicted Functional Partners:
BnaC09g36680D
BnaC09g36680D protein.
    
 0.586
BnaC08g42970D
BnaC08g42970D protein.
    
 0.513
BnaAnng29300D
BnaAnng29300D protein.
      
 0.510
BnaA04g16590D
BnaA04g16590D protein.
      
 0.495
BnaCnng02830D
BnaCnng02830D protein.
      
 0.437
BnaA03g00870D
BnaA03g00870D protein.
      
 0.437
BnaC02g03130D
BnaC02g03130D protein.
      
 0.437
BnaA06g25070D
BnaA06g25070D protein.
    
 0.434
BnaC03g48480D
BnaC03g48480D protein.
    
 0.434
BnaA07g36130D
BnaA07g36130D protein.
    
 0.434
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.