STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaCnng11080DPeroxidase; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. (349 aa)    
Predicted Functional Partners:
BnaA02g04740D
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.988
BnaC09g39060D
BnaC09g39060D protein.
  
 
 0.981
BnaA06g16180D
BnaA06g16180D protein; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.971
BnaAnng19390D
BnaAnng19390D protein; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.971
BnaC05g12790D
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
 
 0.969
rpl20
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
 
 0.969
BnaC03g73190D
BnaC03g73190D protein.
  
 
 0.967
BnaC06g14370D
BnaC06g14370D protein.
   
 0.965
BnaA09g35340D
BnaA09g35340D protein.
   
 0.965
BnaC04g08700D
BnaC04g08700D protein.
   
 0.965
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.