STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC04g22390DBnaC04g22390D protein; Belongs to the glycosyl hydrolase 1 family. (578 aa)    
Predicted Functional Partners:
BnaA02g16260D
BnaA02g16260D protein.
     
  0.693
BnaC06g43850D
BnaC06g43850D protein.
     
  0.693
BnaA01g36270D
BnaA01g36270D protein; Belongs to the glycosyl hydrolase 1 family.
  
  
 
0.671
BnaA01g22890D
BnaA01g22890D protein; Belongs to the glycosyl hydrolase 1 family.
  
  
 
0.669
BnaA09g40110D
BnaA09g40110D protein; Belongs to the glycosyl hydrolase 1 family.
  
  
 
0.668
BnaA01g27010D
BnaA01g27010D protein; Belongs to the glycosyl hydrolase 1 family.
  
  
 
0.668
BnaA09g40120D
BnaA09g40120D protein; Belongs to the glycosyl hydrolase 1 family.
  
  
 
0.666
BnaA01g27000D
BnaA01g27000D protein; Belongs to the glycosyl hydrolase 1 family.
  
  
 
0.666
BnaC04g30040D
Beta-glucosidase.
  
  
 
0.666
BnaA05g12920D
Beta-glucosidase.
  
  
 
0.666
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.