STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g36700DBnaC05g36700D protein. (490 aa)    
Predicted Functional Partners:
BnaC09g50650D
BnaC09g50650D protein.
  
   
 0.604
BnaC06g27510D
BnaC06g27510D protein.
  
    0.512
BnaA09g03040D
BnaA09g03040D protein.
      
 0.511
BnaA04g20740D
BnaA04g20740D protein.
      
 0.495
BnaC04g56510D
BnaC04g56510D protein.
      
 0.495
BnaC04g47830D
BnaC04g47830D protein.
    
 0.493
BnaC04g47840D
BnaC04g47840D protein.
    
 0.493
BnaC04g02190D
BnaC04g02190D protein.
    
 0.493
BnaC02g00340D
BnaC02g00340D protein.
      
 0.483
BnaA06g35290D
BnaA06g35290D protein.
    
 
 0.472
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.