STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA05g32540DBnaA05g32540D protein; Belongs to the helicase family. Dicer subfamily. (1388 aa)    
Predicted Functional Partners:
BnaC09g39060D
BnaC09g39060D protein.
   
 
 0.917
BnaA09g55440D
BnaA09g55440D protein.
   
 
 0.893
BnaA06g16180D
BnaA06g16180D protein; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.877
BnaAnng19390D
BnaAnng19390D protein; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.877
BnaCnng28550D
BnaCnng28550D protein.
   
 
 0.871
BnaA09g55740D
BnaA09g55740D protein.
  
 
 0.868
BnaAnng10790D
BnaAnng10790D protein.
   
 
 0.864
BnaC08g43520D
BnaC08g43520D protein.
   
 
 0.862
BnaA02g04740D
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.862
BnaA04g26680D
BnaA04g26680D protein.
   
 
 0.841
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.