STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA01g13030DBnaA01g13030D protein. (386 aa)    
Predicted Functional Partners:
BnaC05g10700D
BnaC05g10700D protein.
      
 0.648
BnaC05g10710D
BnaC05g10710D protein.
      
 0.648
BnaA06g09280D
BnaA06g09280D protein.
      
 0.648
BnaC03g16690D
BnaC03g16690D protein.
      
 0.580
BnaA10g09480D
BnaA10g09480D protein.
      
 0.570
BnaC09g31660D
BnaC09g31660D protein.
      
 0.570
BnaA10g07100D
Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1; In the N-terminal section; belongs to the aldolase class II family. MtnB subfamily.
    
 0.535
BnaCnng55890D
Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1; In the N-terminal section; belongs to the aldolase class II family. MtnB subfamily.
    
 0.535
BnaAnng29390D
BnaAnng29390D protein.
    
 0.535
BnaA09g08290D
BnaA09g08290D protein.
  
 
 0.530
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (10%) [HD]