Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC08g04940DBnaC08g04940D protein. (1058 aa)    
Predicted Functional Partners:
BnaC07g07150D
BnaC07g07150D protein.
      
 0.534
BnaC06g30390D
BnaC06g30390D protein.
      
 0.516
BnaA02g14600D
BnaA02g14600D protein.
      
 0.516
BnaA02g14610D
BnaA02g14610D protein.
      
 0.516
BnaCnng26310D
BnaCnng26310D protein.
      
 0.516
BnaA04g17540D
BnaA04g17540D protein.
      
 0.470
BnaA09g11130D
BnaA09g11130D protein.
      
 0.470
BnaA02g10150D
BnaA02g10150D protein.
      
 0.451
BnaC02g44780D
BnaC02g44780D protein.
      
 0.451
BnaA08g13440D
BnaA08g13440D protein.
      
 0.444
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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